Further,the presence of multiple modes can affect the interpretability of kernel hyperparameters.

We present a detailed study of Bayesian inference workflows for pulsar timing array data with a focus on enhancing efficiency, robustness and speed through the use of normalizing flow-based nested sampling. Building on the Enterprise framework, we integrate the i-nessai sampler and benchmark its performance on realistic, simulated datasets. We analyze its computational scaling and stability, and show that it achieves accurate posteriors and reliable evidence estimates with substantially reduced runtime, by up to three orders of magnitude depending on the dataset configuration, with respect to conventional single-core parallel-tempering MCMC analyses. These results highlight the potential of flow-based nested sampling to accelerate PTA analyses while preserving the quality of the inference.

For several decades now, Bayesian inference techniques have been applied to theories of particle physics, cosmology and astrophysics to obtain the probability density functions of their free parameters. In this study, we review and compare a wide range of Markov Chain Monte Carlo (MCMC) and nested sampling techniques to determine their relative efficacy on functions that resemble those encountered most frequently in the particle astrophysics literature. Our first series of tests explores a series of high-dimensional analytic test functions that exemplify particular challenges, for example highly multimodal posteriors or posteriors with curving degeneracies. We then investigate two real physics examples, the first being a global fit of the $\Lambda$CDM model using cosmic microwave background data from the Planck experiment, and the second being a global fit of the Minimal Supersymmetric Standard Model using a wide variety of collider and astrophysics data. We show that several examples widely thought to be most easily solved using nested sampling approaches can in fact be more efficiently solved using modern MCMC algorithms, but the details of the implementation matter. Furthermore, we also provide a series of useful insights for practitioners of particle astrophysics and cosmology.

Multi-dimensional parameter spaces are commonly encountered in astroparticle physics theories that attempt to capture novel phenomena. However, they often possess complicated posterior geometries that are expensive to traverse using techniques traditional to this community. Effectively sampling these spaces is crucial to bridge the gap between experiment and theory. Several recent innovations, which are only beginning to make their way into this field, have made navigating such complex posteriors possible. These include GPU acceleration, automatic differentiation, and neural-network-guided reparameterization. We apply these advancements to astroparticle physics experimental results in the context of novel neutrino physics and benchmark their performances against traditional nested sampling techniques. Compared to nested sampling alone, we find that these techniques increase performance for both nested sampling and Hamiltonian Monte Carlo, accelerating inference by factors of $\sim 100$ and $\sim 60$, respectively. As nested sampling also evaluates the Bayesian evidence, these advancements can be exploited to improve model comparison performance while retaining compatibility with existing implementations that are widely used in the natural sciences.

In this paper, we present a novel approach to accelerate the Bayesian inference process, focusing specifically on the nested sampling algorithms. Bayesian inference plays a crucial role in cosmological parameter estimation, providing a robust framework for extracting theoretical insights from observational data. However, its computational demands can be substantial, primarily due to the need for numerous likelihood function evaluations. Our proposed method utilizes the power of deep learning, employing feedforward neural networks to approximate the likelihood function dynamically during the Bayesian inference process. Unlike traditional approaches, our method trains neural networks on-the-fly using the current set of live points as training data, without the need for pre-training. This flexibility enables adaptation to various theoretical models and datasets. We perform simple hyperparameter optimization using genetic algorithms to suggest initial neural network architectures for learning each likelihood function. Once sufficient accuracy is achieved, the neural network replaces the original likelihood function. The implementation integrates with nested sampling algorithms and has been thoroughly evaluated using both simple cosmological dark energy models and diverse observational datasets. Additionally, we explore the potential of genetic algorithms for generating initial live points within nested sampling inference, opening up new avenues for enhancing the efficiency and effectiveness of Bayesian inference methods.

Gaussian noise was then added to produce a noisy simulated data. Given the data, the posterior of a model (a pixelated image of the undistorted background source) could be calculated by adding the likelihood and the prior terms. Furthermore since the model is perfectly linear (and known) and the noise and the prior are Gaussian, the posterior is a high-dimensional Gaussian posterior that could be calculated analytically, allowing us to compare the samples drawn with GGNS with the analytic solution. Figure 2 shows a comparison between the true image, and its noise, and the one recovered by GGNS. We see that we can recover both the correct image, and the noise distribution. We emphasize that this is a uni-modal problem and that the experiment's goal is to demonstrate the capability of GGNS to sample in high dimensions (in this case, 256), such as images, and to test the agreement between the samples and a baseline analytic solution.

We introduce a novel approach to boost the efficiency of the importance nested sampling (INS) technique for Bayesian posterior and evidence estimation using deep learning. Unlike rejection-based sampling methods such as vanilla nested sampling (NS) or Markov chain Monte Carlo (MCMC) algorithms, importance sampling techniques can use all likelihood evaluations for posterior and evidence estimation. However, for efficient importance sampling, one needs proposal distributions that closely mimic the posterior distributions. We show how to combine INS with deep learning via neural network regression to accomplish this task. We also introduce NAUTILUS, a reference open-source Python implementation of this technique for Bayesian posterior and evidence estimation. We compare NAUTILUS against popular NS and MCMC packages, including EMCEE, DYNESTY, ULTRANEST and POCOMC, on a variety of challenging synthetic problems and real-world applications in exoplanet detection, galaxy SED fitting and cosmology. In all applications, the sampling efficiency of NAUTILUS is substantially higher than that of all other samplers, often by more than an order of magnitude. Simultaneously, NAUTILUS delivers highly accurate results and needs fewer likelihood evaluations than all other samplers tested. We also show that NAUTILUS has good scaling with the dimensionality of the likelihood and is easily parallelizable to many CPUs.

Bayesian inference remains one of the most important tool-kits for any scientist, but increasingly expensive likelihood functions are required for ever-more complex experiments, raising the cost of generating a Monte Carlo sample of the posterior. Recent attention has been directed towards the use of emulators of the posterior based on Gaussian Process (GP) regression combined with active sampling to achieve comparable precision with far fewer costly likelihood evaluations. Key to this approach is the batched acquisition of proposals, so that the true posterior can be evaluated in parallel. This is usually achieved via sequential maximization of the highly multimodal acquisition function. Unfortunately, this approach parallelizes poorly and is prone to getting stuck in local maxima. Our approach addresses this issue by generating nearly-optimal batches of candidates using an almost-embarrassingly parallel Nested Sampler on the mean prediction of the GP. The resulting nearly-sorted Monte Carlo sample is used to generate a batch of candidates ranked according to their sequentially conditioned acquisition function values at little cost. The final sample can also be used for inferring marginal quantities. Our proposed implementation (NORA) demonstrates comparable accuracy to sequential conditioned acquisition optimization and efficient parallelization in various synthetic and cosmological inference problems.

Nested sampling is an important tool for conducting Bayesian analysis in Astronomy and other fields, both for sampling complicated posterior distributions for parameter inference, and for computing marginal likelihoods for model comparison. One technical obstacle to using nested sampling in practice is the requirement (for most common implementations) that prior distributions be provided in the form of transformations from the unit hyper-cube to the target prior density. For many applications - particularly when using the posterior from one experiment as the prior for another - such a transformation is not readily available. In this letter we show that parametric bijectors trained on samples from a desired prior density provide a general-purpose method for constructing transformations from the uniform base density to a target prior, enabling the practical use of nested sampling under arbitrary priors. We demonstrate the use of trained bijectors in conjunction with nested sampling on a number of examples from cosmology.

Nested sampling is an efficient algorithm for the calculation of the Bayesian evidence and posterior parameter probability distributions. It is based on the step-by-step exploration of the parameter space by Monte Carlo sampling with a series of values sets called live points that evolve towards the region of interest, i.e. where the likelihood function is maximal. In presence of several local likelihood maxima, the algorithm converges with difficulty. Some systematic errors can also be introduced by unexplored parameter volume regions. In order to avoid this, different methods are proposed in the literature for an efficient search of new live points, even in presence of local maxima. Here we present a new solution based on the mean shift cluster recognition method implemented in a random walk search algorithm. The clustering recognition is integrated within the Bayesian analysis program NestedFit. It is tested with the analysis of some difficult cases. Compared to the analysis results without cluster recognition, the computation time is considerably reduced. At the same time, the entire parameter space is efficiently explored, which translates into a smaller uncertainty of the extracted value of the Bayesian evidence.